CUPID_V2.0
CUPID General Info     "cupid" Command     All Pipelines     All Modules     
The module is used in the following pipelines:     BCD
-df0   DMASK fatal bitmask, for samples that are good, but where delta from previous sample is bad
default: = 512 (bit 9)      override allowed: N > 0 bitmask value
-df1   DMASK fatal bitmask
default: = 30728 (bits 3,11,12,13,14)      override allowed: N > 0 bitmask value
-dfX   DMASK fatal bitmask for radhit samples
default: = 512 (bit 9)      override allowed: N > 0 bitmask value
-gain   Gain (e-/DN)
default: 4.6      override allowed: X >= 0.0
-m   Mapping of bits from input DMASK to output BMASK. (e.g. 3:2+9:3+12:4+6:6+13:10+14:11 means DMASK bit 3 set yields BMASK bit 2 set; DMASK bit 9 yields BMASK bit 3, etc)
default: 3:2+9:3+12:4+6:6+13:10+14:11      override allowed: similar character string
-mr   Minimum number of samples in a ramp or sub-ramp
default: 2      override allowed: N >= 0
-o2_dual_flux   Output 2-plane file (FITS) with mean pair-wise slopes before and after outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-o2_dual_unc   Output 2-plane file (FITS) with mean pair-wise slope uncertainties before and after outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-o2_flux   Output file (FITS) with mean pair-wise slopes after outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-o2_pre_flux   Output file (FITS) with mean pair-wise slopes before outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-o2_pre_unc   Output file (FITS) with mean pair-wise slope uncertainties before outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-o2_unc   Output file (FITS) with mean pair-wise slope uncertainties after outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-o_dual_flux   Output 2-plane file (FITS) with linear fit slopes before and after outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-o_dual_unc   Output 2-plane file (FITS) with linear fit slope uncertainties before and after outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-o_info_outlier   Output file (FITS) with number of sample pairs or deltas: Plane 1 is before outlier rejection; Plane 2 is after 1 Outlier-rejection iteration; Plane 3 is after 2 iterations; etc. Value set to -1 when no outliers found. Use for debug purposes.
default: (none)      override allowed: name of user file
-o_info_radhit   Output file (FITS) with radhit and slope information: Plane 1 is size of delta at the radhit; Plane 2 is slope before radhit; Plane 3 is slope after radhit; Plane 4 is number of radhits in ramp. Use for debug purposes.
default: (none)      override allowed: name of user file
-o_pre_flux   Output file (FITS) with linear fit slopes before outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-o_pre_unc   Output file (FITS) with linear fit slope uncertainties before outlier rejection. Use for debug purposes.
default: (none)      override allowed: name of user file
-pf   PMASK fatal bitmask
default: 32640 (bits 7,8,9,10,11,12,13,14)      override allowed: N > 0 bitmask value
-radhit_maxdel   Maximum number of samples to delete after a radhit
default: 16 (meaning all samples after radhit deleted)      override allowed: N >= 0
-radhit_thresh   Maximum slope (e-/sec) for deleting samples after a radhit
default: 500.0 (samples after radhit are deleted only for faint pixels)      override allowed: X > 0.0
-rej_iter   Maximum number of outlier rejection iterations. Pair-wise slopes are averaged, and those differring from the mean by more than a factor of the standard deviation (see below) are rejected in one iteration.
default: 1      override allowed: N >= 0
-rej_min   Minimum number of deltas or pair-wise sample differences, to perform outlier rejection iteration.
default: 2      override allowed: N >= 0
-rej_nsig   Factor, in units of standard deviation of slope, for rejecting a pair-wise slope during slope-averaging and outlier rejection iteration.
default: 2.0      override allowed: X > 0.0
-sat_pct   Percent threshold of saturated pixels in either peakup array to reject entire plane (ch0 only)
default: 105.0 (entire planes are never rejected for this reason)      override allowed: X > 0.0
-skip_minramp   Minimum ramp size to skip samples at the start of a ramp
default: 9 (samples skipped at start only for 16 sample ramps)      override allowed: N >= 0
-skip_n   Number of samples to skip at the start of a ramp
default: 1      override allowed: N >= 0
-t   Output slope renormalization divisor (integration time in sec.)
default: FITS keywords GRPTIME + RAMPTIME      override allowed: X > 0.0
-v   Level of verbose output: 0 = No output; 1 = minimal; 2 = nominal; 3 = Print outlier info.; 4 = Print slopes before and after radhits; 5 = Print coordinates of radhit samples
default: 2      override allowed: 0 <= N <= 5
-ip   Input PMASK file (FITS)
default: appropriate pmask.fits file in ../cal/      override allowed: name of user's calibration file
-n   Namelist file
default: appropriate slope_finder.nl file in ../cdf/      override allowed: name of user's namelist file
-i   Input FLUX file (FITS)
[pipeline datafile --- override not allowed]
-id   Input DMASK file (FITS)
[pipeline datafile --- override not allowed]
-iu   Input UNC file (FITS)
[pipeline datafile --- override not allowed]
-o_flux   Output FLUX file (FITS)
[pipeline datafile --- override not allowed]
-o_unc   Output UNC file (FITS)
[pipeline datafile --- override not allowed]
-ob   Output BMASK file (FITS)
[pipeline datafile --- override not allowed]
      (none)